About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33882495_33884165_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33882495 - 33884165
Intron Length:
1671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCCTTCTAAAAA
Flanking Amino Acid:
GNATIISAGARSSHLPLFVQ
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
69.2
38.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
79.4
0.66
0.8
73.3
31.8
Minor 5ss
33.7
-1.9
3.1
43.4
44.3
Minor BPS
53.8
0.11
1.8
63.42
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003890
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003978
33874937 - 33889834
14898