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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33884435_33884862_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33884435 - 33884862
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGGGAC
5'SS Class:
major
3'SS Sequence:
CCCTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TGTTTTCCACCC
Flanking Amino Acid:
SLQPRFGGCLVPLLTTWKGR
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
61.8
36.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
84.4
0.77
0.7
79.7
25.8
Minor 5ss
35.7
-1.6
3.5
45.5
44.5
Minor BPS
44.2
-0.4
2
59.42
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003890
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003978
33874937 - 33889834
14898