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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33931580_33932974_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33931580 - 33932974
Intron Length:
1395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAATT
Flanking Amino Acid:
AAAAARRRAAAFLFSSAVRH
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.2
0.81
0.7
83.9
24.1
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
78.1
0.96
1
86.75
33.6

Associated Gene:

Gene:
MRPL21
Ensembl Gene ID:
ENSAPLG00000003685
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003777
33917400 - 33933068
15669