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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33932274_33932974_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33932274 - 33932974
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTACTTCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATCTTCTTAACT
Flanking Amino Acid:
GGGRCPAEGGSSLIPFWNKK
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
73.9
0.54
0.8
68.8
31.6
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
82.9
1.11
1
89.83
34.4

Associated Gene:

Gene:
MRPL21
Ensembl Gene ID:
ENSAPLG00000003685
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028085
33917400 - 33933171
15772