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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33933156_33934583_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33933156 - 33934583
Intron Length:
1428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCACCG
5'SS Class:
major
3'SS Sequence:
GTGTGGTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
AGTTTGGCAAAT
Flanking Amino Acid:
DEREAELAESRAWQENISLK
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.3
50.9
46
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
72
0.5
1.1
61.5
48.6
Minor 5ss
36.4
-1.5
3.3
48.6
47.1
Minor BPS
38.4
-0.8
2.6
60.21
43.1

Associated Gene:

Gene:
IGHMBP2
Ensembl Gene ID:
ENSAPLG00000003251
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003345
33933067 - 33974582
41516