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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33968851_33969202_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33968851 - 33969202
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TCGTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTTTCTTTAAAC
Flanking Amino Acid:
IAVVAPYNLQVDMLREHLCH
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
84.2
0.77
0.8
76.4
37.6
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
82.1
0.99
1.2
87.66
28.2

Associated Gene:

Gene:
IGHMBP2
Ensembl Gene ID:
ENSAPLG00000003251
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041604
33934177 - 33974582
40406
ENSAPLT00000003345
33933067 - 33974582
41516