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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33990158_33990759_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33990158 - 33990759
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGAAGG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
GTATACACATCT
Flanking Amino Acid:
LTWTAWRFFIRDITLRYKEI
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
62.8
43.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
93
0.97
0.5
93
16.2
Minor 5ss
27.9
-2.5
2.8
32.4
41.9
Minor BPS
43.3
-0.4
2.1
64.68
44.6

Associated Gene:

Gene:
PTDSS2
Ensembl Gene ID:
ENSAPLG00000002950
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002988
33988830 - 34028051
39222