About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33990946_33995597_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33990946 - 33995597
Intron Length:
4652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGCCAG
5'SS Class:
major
3'SS Sequence:
ATTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
MREIYDFMDDPKFHKKLGQQ
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.8
0.26
1.4
51
47.3
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
86.6
0.82
0.8
81.1
35.9
Minor 5ss
39.1
-1.2
3.1
52.1
44.8
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
PTDSS2
Ensembl Gene ID:
ENSAPLG00000002950
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002988
33988830 - 34028051
39222