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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33998064_33998792_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33998064 - 33998792
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTCTTATAACA
Flanking Amino Acid:
WQGLWNIPTYKGKMKRIVFQ
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90.8
0.92
0.7
88.9
28.1
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
64
0.43
1.6
77.35
32.8

Associated Gene:

Gene:
PTDSS2
Ensembl Gene ID:
ENSAPLG00000002950
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002988
33988830 - 34028051
39222