Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33998912_34000347_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33998912 - 34000347

Intron Length:

1436

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTATGTACT

5'SS Class:

major

3'SS Sequence:

TTTCTCCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATGAT

U12 Branch Point Sequence:

ATTTCTTCACCA

Flanking Amino Acid:

PNFSECWWDHWIMDVILCNG

Intron Amino Acid Position:

294

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.2

0.55

1.3

77.1

37.8

Major BPS

84.6

0.86

41.2

Major PPT

0.92

0.6

Minor 5ss

45.8

-0.4

2.5

60.2

37.4

Minor BPS

59.4

0.29

1.8

73.85

38.1

Associated Gene:

Gene:

PTDSS2

Ensembl Gene ID:

ENSAPLG00000002950

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002988

33988830 - 34028051

39222