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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34000462_34002250_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34000462 - 34002250
Intron Length:
1789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TGATATTTGAAA
Flanking Amino Acid:
PAHFFGWYLKTLMIRDWWMC
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
78.3
36.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
80.5
0.69
0.8
74.8
33.6
Minor 5ss
38.8
-1.3
3.1
50
40.3
Minor BPS
50.6
0.01
1.6
62.01
37.4

Associated Gene:

Gene:
PTDSS2
Ensembl Gene ID:
ENSAPLG00000002950
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002988
33988830 - 34028051
39222