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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34018396_34027110_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34018396 - 34027110
Intron Length:
8715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAGA
5'SS Class:
major
3'SS Sequence:
TTCTCAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTCTTCTCAATT
Flanking Amino Acid:
VYDDGTNTFFWRAHTLTVLF
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
67.5
39.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
77.2
0.61
0.8
75
33.5
Minor 5ss
26.3
-2.7
2.9
27.6
38.5
Minor BPS
62.9
0.48
1.6
75.15
42.4

Associated Gene:

Gene:
PTDSS2
Ensembl Gene ID:
ENSAPLG00000002950
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002988
33988830 - 34028051
39222