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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34042880_34042989_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34042880 - 34042989
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
TTCTCTCTACTC
Flanking Amino Acid:
GITVFNSSQVSKEICEANNT
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
81.7
0.71
0.7
73
31.9
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
50.2
-0
1.9
66.2
40.3

Associated Gene:

Gene:
ANO9
Ensembl Gene ID:
ENSAPLG00000014147
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038828
34040875 - 34050419
9545
ENSAPLT00000018340
34040875 - 34049580
8706
ENSAPLT00000014768
34039856 - 34049580
9725
ENSAPLT00000047532
34039060 - 34049580
10521