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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34044678_34045140_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34044678 - 34045140
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TATATATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATAT
Flanking Amino Acid:
WDLYMWDEDEEELALELINN
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.4
0.62
0.9
74.7
39.7
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
59
0.36
1.9
82.22
38.9

Associated Gene:

Gene:
ANO9
Ensembl Gene ID:
ENSAPLG00000014147
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038828
34040875 - 34050419
9545
ENSAPLT00000018340
34040875 - 34049580
8706
ENSAPLT00000014768
34039856 - 34049580
9725
ENSAPLT00000047532
34039060 - 34049580
10521