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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34045246_34045501_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34045246 - 34045501
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGAC
5'SS Class:
major
3'SS Sequence:
CCCTCCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TTCTCCTCACCC
Flanking Amino Acid:
TIVLILALLMIAVLIGIAHA
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.2
33.9
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
73.8
0.54
0.7
67.5
26
Minor 5ss
39.2
-1.2
3.1
48.3
42.5
Minor BPS
61.8
0.35
1.9
74.59
42.4

Associated Gene:

Gene:
ANO9
Ensembl Gene ID:
ENSAPLG00000014147
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038828
34040875 - 34050419
9545
ENSAPLT00000018340
34040875 - 34049580
8706
ENSAPLT00000014768
34039856 - 34049580
9725
ENSAPLT00000047532
34039060 - 34049580
10521