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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34045701_34046277_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
34045701 - 34046277
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTTCGCCCT
5'SS Class:
weak_major
3'SS Sequence:
TTTCTGTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
TTTCTGTCTACA
Flanking Amino Acid:
QSVARGGWWWEKPRTFSQLV
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.9
0.16
1.3
49.4
46.8
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
85.9
0.81
0.8
80.2
32
Minor 5ss
35.4
-1.7
3.1
42
44.3
Minor BPS
44.1
-0.4
2.4
64.71
41.3

Associated Gene:

Gene:
ANO9
Ensembl Gene ID:
ENSAPLG00000014147
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047532
34039060 - 34049580
10521