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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34046390_34046446_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
34046390 - 34046446
Intron Length:
57

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCACCAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CCCTCCTCACCA
Flanking Amino Acid:
SLIYIAFFLGRTAPRCHPSG
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
72.6
38.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
49.7
-0
1.6
57.4
31.9
Minor 5ss
29.4
-2.4
3.2
40.9
45.4
Minor BPS
49.6
-0
1.9
58.78
47

Associated Gene:

Gene:
ANO9
Ensembl Gene ID:
ENSAPLG00000014147
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014768
34039856 - 34049580
9725