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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34049273_34049391_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34049273 - 34049391
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TTTGCTTTCTGC
Flanking Amino Acid:
ARLAFLILFEHVALCVKLIA
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
64.9
0.37
1
67
29.8
Major PPT
85.4
0.8
0.8
80.9
31.1
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
36.7
-1
3.6
61.09
45

Associated Gene:

Gene:
ANO9
Ensembl Gene ID:
ENSAPLG00000014147
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047532
34039060 - 34049580
10521
ENSAPLT00000038828
34040875 - 34050419
9545
ENSAPLT00000018340
34040875 - 34049580
8706
ENSAPLT00000014768
34039856 - 34049580
9725