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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34057506_34057585_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34057506 - 34057585
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCCCAA
U12 Branch Point Sequence:
GGTTGCCCAACC
Flanking Amino Acid:
LGSESSQDTTWFGQNASEHL
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
49.1
-0
1.3
58.4
40.3
Major PPT
85.1
0.79
0.7
77.1
31.6
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
45.9
-0.3
2.2
61.44
43.2

Associated Gene:

Gene:
SIGIRR
Ensembl Gene ID:
ENSAPLG00000014220
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039732
34055583 - 34059648
4066
ENSAPLT00000036975
34055583 - 34059308
3726
ENSAPLT00000014838
34056880 - 34059894
3015