About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34058578_34058656_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34058578 - 34058656
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAACC
5'SS Class:
strong_major
3'SS Sequence:
GCCTGACTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
CATGCCTGACTC
Flanking Amino Acid:
LEQDWCNSSFREGLWRLLEL
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
72.7
36.9
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
65.4
0.35
0.9
56.9
37.8
Minor 5ss
33.7
-1.9
3.1
44.5
43
Minor BPS
47.3
-0.2
1.8
55.89
42.9

Associated Gene:

Gene:
SIGIRR
Ensembl Gene ID:
ENSAPLG00000014220
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039732
34055583 - 34059648
4066
ENSAPLT00000036975
34055583 - 34059308
3726
ENSAPLT00000014838
34056880 - 34059894
3015