Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34058808_34059180_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34058808 - 34059180

Intron Length:

373

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAGCG

5'SS Class:

strong_major

3'SS Sequence:

TTACCCCACGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAT

U12 Branch Point Sequence:

CCTAATTCAACT

Flanking Amino Acid:

TLLVWRAGSMTPSSDFWKEL

Intron Amino Acid Position:

289

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

65.2

Major BPS

81.9

0.79

0.9

80.1

Major PPT

68.3

0.41

0.9

62.7

33.1

Minor 5ss

30.9

-2.2

3.3

36.7

41.4

Minor BPS

48.9

-0

1.8

65.64

44.9

Associated Gene:

Gene:

SIGIRR

Ensembl Gene ID:

ENSAPLG00000014220

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014838

34056880 - 34059894

3015

ENSAPLT00000039732

34055583 - 34059648

4066