Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34061600_34061842_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

34061600 - 34061842

Intron Length:

243

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTACGTACC

5'SS Class:

major

3'SS Sequence:

TGTTCTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTGTGAC

U12 Branch Point Sequence:

TGACAGGTGACC

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

71.7

38.2

Major BPS

53.6

0.09

1.4

48.8

46.3

Major PPT

86.6

0.82

0.8

81.1

30.9

Minor 5ss

36.1

-1.6

2.9

43.4

37.9

Minor BPS

37.5

-1

2.5

49.85

40.3

Associated Gene:

Gene:

PKP3

Ensembl Gene ID:

ENSAPLG00000014382

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030218

34061599 - 34066110

4512