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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34061931_34062298_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34061931 - 34062298
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAGCT
5'SS Class:
major
3'SS Sequence:
CTCTCTGCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CACCCAAAAACT
Flanking Amino Acid:
KLFYIKKRRDSSDNEKSSRA
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
68.6
36.5
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
77.4
0.62
0.9
68.8
37.2
Minor 5ss
26.2
-2.7
3.5
38.7
46.6
Minor BPS
41.8
-0.5
2.1
56.79
45

Associated Gene:

Gene:
PKP3
Ensembl Gene ID:
ENSAPLG00000014382
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017972
34061657 - 34066110
4454
ENSAPLT00000015011
34061657 - 34066071
4415