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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34062928_34063150_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34062928 - 34063150
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGACA
5'SS Class:
major
3'SS Sequence:
TTTGCCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GGTGTCTCCACC
Flanking Amino Acid:
LQNITAGDRRWAGVLSRLAL
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
68.4
38.2
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
80.8
0.69
0.8
74.3
30.8
Minor 5ss
26.7
-2.7
2.9
23.7
36.8
Minor BPS
45.3
-0.3
2
55.57
42.6

Associated Gene:

Gene:
PKP3
Ensembl Gene ID:
ENSAPLG00000014382
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015011
34061657 - 34066071
4415
ENSAPLT00000030218
34061599 - 34066110
4512
ENSAPLT00000017972
34061657 - 34066110
4454