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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34063857_34064048_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34063857 - 34064048
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAC
U12 Branch Point Sequence:
CAGGACTGACCC
Flanking Amino Acid:
SLEVGKSEDKSVENAVCVLR
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
71.4
40.3
Major BPS
55.9
0.15
1.2
49
38
Major PPT
84.4
0.77
0.7
77.3
31.4
Minor 5ss
35.1
-1.7
3.1
48.4
47.3
Minor BPS
41.3
-0.6
1.9
45.02
43

Associated Gene:

Gene:
PKP3
Ensembl Gene ID:
ENSAPLG00000014382
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015011
34061657 - 34066071
4415
ENSAPLT00000030218
34061599 - 34066110
4512
ENSAPLT00000017972
34061657 - 34066110
4454