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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34064992_34065174_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34064992 - 34065174
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCACC
5'SS Class:
major
3'SS Sequence:
TCTCCCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
GGCCTCTCAACC
Flanking Amino Acid:
CYSDSNAKKQARSLQAMPKL
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
65.8
40.2
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
78.5
0.64
0.7
72.8
25.3
Minor 5ss
33.8
-1.8
3.1
43.2
44.2
Minor BPS
51.4
0.02
1.6
57.57
40.7

Associated Gene:

Gene:
PKP3
Ensembl Gene ID:
ENSAPLG00000014382
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030218
34061599 - 34066110
4512
ENSAPLT00000017972
34061657 - 34066110
4454
ENSAPLT00000015011
34061657 - 34066071
4415