About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34065299_34065673_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34065299 - 34065673
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTGTGGCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCTTCCTCATCT
Flanking Amino Acid:
HSTLLTQQSGGFDDIDLPSA
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
72.1
0.5
1
61.6
44.5
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
65.9
0.58
1.8
84.24
42.6

Associated Gene:

Gene:
PKP3
Ensembl Gene ID:
ENSAPLG00000014382
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030218
34061599 - 34066110
4512
ENSAPLT00000017972
34061657 - 34066110
4454
ENSAPLT00000015011
34061657 - 34066071
4415