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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34113315_34113821_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34113315 - 34113821
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGGTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGAGAG
U12 Branch Point Sequence:
TGCGTCTTGGTT
Flanking Amino Acid:
GFVALAFSVKARDRKVAGDV
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
42.6
-0.4
1.5
38.2
41.7
Major PPT
82.8
0.74
0.9
77.3
37
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
39.7
-0.7
3.4
62.26
42.8

Associated Gene:

Gene:
IFITM5
Ensembl Gene ID:
ENSAPLG00000014998
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015625
34113129 - 34114040
912