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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34115967_34116135_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34115967 - 34116135
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
GCTTCATGCATG
Flanking Amino Acid:
ESGQRFPLGEGHSISFPTVA
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
69.5
37.7
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
92.2
0.95
0.7
88.3
28.9
Minor 5ss
35.9
-1.6
3.4
47.9
47.7
Minor BPS
43.4
-0.6
2.1
50.06
44

Associated Gene:

Gene:
PGGHG
Ensembl Gene ID:
ENSAPLG00000015013
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015653
34114902 - 34132133
17232
ENSAPLT00000032486
34114902 - 34132133
17232
ENSAPLT00000026191
34114902 - 34130242
15341
ENSAPLT00000020600
34114902 - 34131194
16293
ENSAPLT00000018060
34114902 - 34130242
15341