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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34116351_34117962_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34116351 - 34117962
Intron Length:
1612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CCTGCCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTGACTGACTT
Flanking Amino Acid:
TGFRPRWISLWITKTSLLFN
Intron Amino Acid Position:
653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
72.9
31.2
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
74
0.54
0.8
65.2
36.2
Minor 5ss
26.8
-2.7
3.3
35
42.5
Minor BPS
48.7
-0
2
73.59
43.5

Associated Gene:

Gene:
PGGHG
Ensembl Gene ID:
ENSAPLG00000015013
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026191
34114902 - 34130242
15341
ENSAPLT00000018060
34114902 - 34130242
15341