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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34119133_34119396_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34119133 - 34119396
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCAAAA
U12 Branch Point Sequence:
CAGCCAGCAAAA
Flanking Amino Acid:
TDVNGPAMTWSMFAVGWLEL
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
69.6
42.7
Major BPS
47.7
-0.1
1
51
32
Major PPT
78.8
0.65
0.7
72.8
25.4
Minor 5ss
31.2
-2.2
3.1
31.3
42.6
Minor BPS
35.5
-1.1
2.1
40.98
38.7

Associated Gene:

Gene:
PGGHG
Ensembl Gene ID:
ENSAPLG00000015013
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020600
34114902 - 34131194
16293
ENSAPLT00000018060
34114902 - 34130242
15341
ENSAPLT00000015653
34114902 - 34132133
17232
ENSAPLT00000032486
34114902 - 34132133
17232
ENSAPLT00000026191
34114902 - 34130242
15341