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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34120285_34120794_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34120285 - 34120794
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACACGC
5'SS Class:
major
3'SS Sequence:
CGCTCCTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TGTGCCTGATAT
Flanking Amino Acid:
SAYTNALAQRSLRFAADIAQ
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
60.8
44.4
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
79.6
0.67
0.8
76.2
32.3
Minor 5ss
37.9
-1.4
3.1
51.7
44.8
Minor BPS
49.1
0.01
1.9
71.21
45

Associated Gene:

Gene:
PGGHG
Ensembl Gene ID:
ENSAPLG00000015013
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015653
34114902 - 34132133
17232
ENSAPLT00000032486
34114902 - 34132133
17232
ENSAPLT00000026191
34114902 - 34130242
15341
ENSAPLT00000020600
34114902 - 34131194
16293
ENSAPLT00000018060
34114902 - 34130242
15341