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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34125545_34125871_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34125545 - 34125871
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCGA
5'SS Class:
major
3'SS Sequence:
TGGCTCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
TTTTCTCTGGCT
Flanking Amino Acid:
AFEQYYYTTQDQKLFREDGG
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
62.9
43.2
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
75.6
0.58
0.9
65.9
40.9
Minor 5ss
29.5
-2.4
3.3
38.9
46.2
Minor BPS
45
-0.3
3.6
83.72
37.5

Associated Gene:

Gene:
PGGHG
Ensembl Gene ID:
ENSAPLG00000015013
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015653
34114902 - 34132133
17232
ENSAPLT00000032486
34114902 - 34132133
17232
ENSAPLT00000026191
34114902 - 34130242
15341
ENSAPLT00000020600
34114902 - 34131194
16293