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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34126004_34126200_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34126004 - 34126200
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGACA
5'SS Class:
major
3'SS Sequence:
CTTCTCCCAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAG
U12 Branch Point Sequence:
TTGTGTTTAGCT
Flanking Amino Acid:
LRNAEEQGYKGAKFPWESAA
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
68.4
38.2
Major BPS
57.4
0.18
1.6
57.4
49.1
Major PPT
75.2
0.57
0.8
70.9
28.6
Minor 5ss
25.7
-2.8
3.1
31.1
42.7
Minor BPS
58.1
0.33
2
79.35
43.3

Associated Gene:

Gene:
PGGHG
Ensembl Gene ID:
ENSAPLG00000015013
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015653
34114902 - 34132133
17232
ENSAPLT00000032486
34114902 - 34132133
17232
ENSAPLT00000026191
34114902 - 34130242
15341
ENSAPLT00000020600
34114902 - 34131194
16293