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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34129991_34130964_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
34129991 - 34130964
Intron Length:
974

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.03
0.8
74.4
35.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.7
0.89
0.7
85
29.8
Minor 5ss
26.7
-2.7
4
38.8
46.5
Minor BPS
63.5
0.5
1.6
78.46
39

Associated Gene:

Gene:
PGGHG
Ensembl Gene ID:
ENSAPLG00000015013
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032486
34114902 - 34132133
17232