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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34129991_34131130_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
34129991 - 34131130
Intron Length:
1140

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.4
1.17
0.7
94.3
13.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.7
0.89
0.7
85
29.8
Minor 5ss
26.7
-2.7
3.6
37.4
40
Minor BPS
63.5
0.5
1.6
78.46
39

Associated Gene:

Gene:
PGGHG
Ensembl Gene ID:
ENSAPLG00000015013
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020600
34114902 - 34131194
16293