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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34139998_34141223_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34139998 - 34141223
Intron Length:
1226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGTTCTTGATCT
Flanking Amino Acid:
AKSAKVTVNEVELLVMKALS
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
81.7
0.71
0.9
86.7
24.5
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
62.6
0.47
1.7
81.71
39.7

Associated Gene:

Gene:
PSMD13
Ensembl Gene ID:
ENSAPLG00000015241
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015898
34138282 - 34146328
8047