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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3414089_3429623_F

Intron Information:

Intron Rank:
146178
Intron Class:
major
Intron Phase:
Intron Coordinates:
3414089 - 3429623
Intron Length:
15535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCGT
5'SS Class:
strong_major
3'SS Sequence:
ACATCTCTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
CATCTCTTATAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
75.1
41.1
Major BPS
61.1
0.28
1
67
29.8
Major PPT
72.1
0.5
0.9
65.7
35.2
Minor 5ss
35.3
-1.7
3.1
50.5
45.8
Minor BPS
47.5
-0.3
1.8
50.91
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028743
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017375
3373193 - 3430164
56972