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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34142293_34143206_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34142293 - 34143206
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TATCCTCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCATTTTATCC
Flanking Amino Acid:
QALKSAWGQQPDLAANEALL
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.6
0.64
0.8
72.5
31.8
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
55.8
0.16
1.6
65.97
40.2

Associated Gene:

Gene:
PSMD13
Ensembl Gene ID:
ENSAPLG00000015241
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015898
34138282 - 34146328
8047