About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34144143_34144439_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34144143 - 34144439
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TTGCCTGTAACA
Flanking Amino Acid:
LNIGDLQVTKETIEEVEEML
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
78.7
0.65
0.8
69.7
36.7
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
57.9
0.24
2
72.37
40

Associated Gene:

Gene:
PSMD13
Ensembl Gene ID:
ENSAPLG00000015241
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015898
34138282 - 34146328
8047