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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34144822_34145176_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34144822 - 34145176
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCACTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTTTCTCCACT
Flanking Amino Acid:
IILHVVRQMTDPTVALTFLE
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.8
34.3
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
79.4
0.66
0.8
70.7
34.7
Minor 5ss
31.6
-2.1
3.4
42.4
45.1
Minor BPS
64
0.52
2
87.74
37.8

Associated Gene:

Gene:
PSMD13
Ensembl Gene ID:
ENSAPLG00000015241
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015898
34138282 - 34146328
8047