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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34145349_34146021_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34145349 - 34146021
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTACCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTTGCCCTGACT
Flanking Amino Acid:
CFAQGDGLIKLYENFISEFE
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
63.9
42.4
Major BPS
79
0.72
1
78.4
31.2
Major PPT
76.6
0.6
0.9
70
35.6
Minor 5ss
25.7
-2.8
3.1
32.8
42.2
Minor BPS
67.7
0.64
1.8
88.28
36.8

Associated Gene:

Gene:
PSMD13
Ensembl Gene ID:
ENSAPLG00000015241
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015898
34138282 - 34146328
8047