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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34156382_34157032_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34156382 - 34157032
Intron Length:
651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTAGAA
5'SS Class:
major
3'SS Sequence:
ACCCTGGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATTTGTTACCT
Flanking Amino Acid:
KLVNMFDKLSREQVIQPMGI
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
64.3
35.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
68.3
0.41
1
60.6
39.7
Minor 5ss
28.7
-2.4
3.4
38.4
46.5
Minor BPS
50.7
0.1
2.3
74.86
42

Associated Gene:

Gene:
RIC8A
Ensembl Gene ID:
ENSAPLG00000000578
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000983
34156261 - 34169880
13620