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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34161272_34161543_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34161272 - 34161543
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCTGT
5'SS Class:
major
3'SS Sequence:
TGTGGCCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TCCCCCTTCACT
Flanking Amino Acid:
RQTRKFLKAKVLPPLRDVKN
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.1
62.7
44.3
Major BPS
71.2
0.53
1
61
37.5
Major PPT
69.9
0.45
0.9
62.7
39.7
Minor 5ss
44.6
-0.6
3.1
65.7
45.4
Minor BPS
63.8
0.51
1.8
77.05
45.4

Associated Gene:

Gene:
RIC8A
Ensembl Gene ID:
ENSAPLG00000000578
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000983
34156261 - 34169880
13620