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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34162634_34163383_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34162634 - 34163383
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTTAG
5'SS Class:
major
3'SS Sequence:
TTCACATGTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TCTTCTTTCACA
Flanking Amino Acid:
DGEDRTEEFHSHTVNLLGNL
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
67.6
40.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
72.5
0.51
1
69.7
40.5
Minor 5ss
41
-1
2.6
49.2
47.1
Minor BPS
69.7
0.62
1.7
78.6
38.6

Associated Gene:

Gene:
RIC8A
Ensembl Gene ID:
ENSAPLG00000000578
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000983
34156261 - 34169880
13620