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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34163479_34163665_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34163479 - 34163665
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGGGGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCCTGATCG
Flanking Amino Acid:
FDSSKREVDEEDAALYRHLG
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
100
1.24
0.5
100
0
Major PPT
60.6
0.24
1.2
53.8
49.8
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
66.9
0.39
1.8
76.58
40.7

Associated Gene:

Gene:
RIC8A
Ensembl Gene ID:
ENSAPLG00000000578
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000983
34156261 - 34169880
13620