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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34166235_34169796_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34166235 - 34169796
Intron Length:
3562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTCCTTCATT
Flanking Amino Acid:
LKVLQIYNQEKSQCFTFDDE
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.4
0.5
0.8
65.2
30.7
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
74.5
0.85
1.7
89.11
35.7

Associated Gene:

Gene:
RIC8A
Ensembl Gene ID:
ENSAPLG00000000578
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000983
34156261 - 34169880
13620