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Intron Name: Anas_platyrhynchos_platyrhynchos_5_34172974_34176029_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

34172974 - 34176029

Intron Length:

3056

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGCTGTTG

5'SS Class:

weak_major

3'SS Sequence:

AGGAGAGGGTGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCTGCAG

U12 Branch Point Sequence:

TTTGCCTGCAGG

Flanking Amino Acid:

IMGSDPKVRAGNGVGARFLL

Intron Amino Acid Position:

1029

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.5

0.15

1.1

50.4

42.8

Major BPS

40.6

-0.5

1.6

48.7

45.1

Major PPT

36.4

-0.7

1.6

24.5

41.4

Minor 5ss

33.5

-1.9

3.5

37.4

47.3

Minor BPS

45.8

-0.4

2.3

59.75

47.8

Associated Gene:

Gene:

PITPNM1

Ensembl Gene ID:

ENSAPLG00000013895

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014495

34172477 - 34188176

15700