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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34176161_34176280_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34176161 - 34176280
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCGTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTGAC
U12 Branch Point Sequence:
TGGCGCTGAGCC
Flanking Amino Acid:
IGIYPVRMVVRGDHSYAEAY
Intron Amino Acid Position:
985

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
48.9
-0
1.3
40.5
41.4
Major PPT
70.7
0.47
0.9
61.4
40
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
43.8
-0.4
2
53.8
43.4

Associated Gene:

Gene:
PITPNM1
Ensembl Gene ID:
ENSAPLG00000013895
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014495
34172477 - 34188176
15700