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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34178467_34178710_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34178467 - 34178710
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
AGTGCTGGCATT
Flanking Amino Acid:
GDSQQPGSSCSLQPSEAPLE
Intron Amino Acid Position:
643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
78.6
0.64
0.9
72.4
37.7
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
37.7
-0.8
2.3
55.14
41.6

Associated Gene:

Gene:
PITPNM1
Ensembl Gene ID:
ENSAPLG00000013895
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014495
34172477 - 34188176
15700